Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yihYHypothetical protein. (268 aa)    
Predicted Functional Partners:
pgbA
Plasminogen-binding protein PgbA.
       0.801
ALU99122.1
Putative FAD-linked oxidoreductase.
       0.801
cysC
Adenylyl-sulfate kinase.
     
 0.794
yihN
Inner membrane protein YihN.
      
 0.778
zur
Zinc uptake transcriptional repressor.
      
 0.778
creD
Inner membrane protein CreD.
      
 0.775
mepM_2
Murein DD-endopeptidase MepM.
       0.620
typA
GTP-binding protein TypA/BipA.
      0.580
ALU98759.1
Sodium Bile acid symporter family protein.
      
 0.507
lptD
LPS-assembly protein LptD precursor; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
     0.489
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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