STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALU99204.1Putative 3'-5' exonuclease related to the exonuclease domain of PolB. (263 aa)    
Predicted Functional Partners:
hepA
Heterocyst differentiation ATP-binding protein HepA.
 
     0.673
galE
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.647
pglJ
Alpha-1,4-N-acetylgalactosamine transferase PglJ, CAzY family GT4; N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase.
       0.647
pglB
Undecaprenyl-diphosphooligosaccharide--protein glycotransferase.
       0.634
pglA
N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase.
       0.633
pglC
Undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase.
       0.633
pglI
GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase.
       0.619
hyaD
Hyaluronan synthase.
       0.611
htrB
Lipid A biosynthesis lauroyl acyltransferase.
       0.611
rfaC
Lipopolysaccharide heptosyltransferase 1.
       0.611
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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