Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALU99318.1Hypothetical protein. (173 aa)    
Predicted Functional Partners:
flgE_2
Flagellar hook protein FlgE.
  
   0.949
ALU99319.1
Hypothetical protein.
     
 0.897
ALV00226.1
Tetratricopeptide repeat protein.
    
 
 0.876
ALU98661.1
PDZ domain (Also known as DHR or GLGF).
    
   0.871
flaA_3
Flagellin A; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
  
 0.825
motB
Motility protein B.
   
 
 0.807
ALU98756.1
Hypothetical protein.
    
 
 0.783
ALU98610.1
Hypothetical protein.
      
 0.778
flaA_2
Flagellin A; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
  
 0.761
glnG
Nitrogen regulation protein NR(I).
 
   
 0.760
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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