Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALU99360.1Hypothetical protein. (367 aa)    
Predicted Functional Partners:
pgbA
Plasminogen-binding protein PgbA.
      
 0.778
mazF9_1
mRNA interferase MazF9; Toxic component of a type II toxin-antitoxin (TA) system.
      
 0.777
ALU99359.1
Hypothetical protein; Belongs to the UPF0246 family.
       0.607
glnH
ABC transporter glutamine-binding protein GlnH precursor.
       0.521
galE
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
      
 0.457
pglE
UDP-N-acetylbacillosamine transaminase; Belongs to the DegT/DnrJ/EryC1 family.
      
 0.456
proP_2
Proline/betaine transporter.
       0.418
kpsM
Polysialic acid transport protein KpsM.
      
 0.401
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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