STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALU99392.1Hypothetical protein. (613 aa)    
Predicted Functional Partners:
ALU98971.1
Fibronectin-binding protein A N-terminus (FbpA).
      
 0.793
tlyA
16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA.
      
 0.656
yfkJ
Low molecular weight protein-tyrosine-phosphatase YfkJ.
      
 0.654
ALU99391.1
Putative acyl-CoA thioester hydrolase.
       0.647
ALU98969.1
Putative phospholipase A1 precursor; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
      
 0.636
pglD_3
UDP-N-acetylbacillosamine N-acetyltransferase.
      
 0.630
oprF
Outer membrane porin F precursor.
    
 
 0.600
degP
Periplasmic serine endoprotease DegP precursor; Belongs to the peptidase S1C family.
      
 0.588
hup
DNA-binding protein HU; Belongs to the bacterial histone-like protein family.
       0.572
cdtA
Cytolethal distending toxin subunit A precursor; CDTs are cytotoxins.
      
 0.550
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.