Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
spoVDStage V sporulation protein D. (611 aa)    
Predicted Functional Partners:
mrdB
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 0.996
pbpF_1
Penicillin-binding protein 1F.
 
 
 0.979
penA
Penicillin-binding protein 2.
  
  
 0.958
ftsW
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 
 0.931
pbpF_2
Penicillin-binding protein 1F.
     
 0.908
mreB
Rod shape-determining protein MreB.
 
 
 0.899
mreC
Rod shape-determining protein MreC.
 
 
 0.895
mltD
Membrane-bound lytic murein transglycosylase D precursor.
  
 
 0.879
kdsC
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC.
     
 0.849
rlpA
RlpA-like protein precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
   
 
 0.843
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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