STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALU99781.1Transglycosylase SLT domain protein. (146 aa)    
Predicted Functional Partners:
ALU99778.1
AAA-like domain protein.
 
   
 0.943
ALU99779.1
Hypothetical protein.
       0.777
ALU99780.1
Hypothetical protein.
       0.773
ALV00048.1
Conjugative relaxosome accessory transposon protein.
 
     0.766
ALU99991.1
AAA-like domain protein.
 
   
 0.761
ALV00055.1
Bacterial conjugation TrbI-like protein.
 
     0.761
ALU99818.1
TraU protein.
  
     0.760
ALV00032.1
TraU protein.
  
     0.760
ALV00044.1
Conjugal transfer mating pair stabilization protein TraN.
  
     0.758
ALU99817.1
Hypothetical protein.
  
    0.756
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.