Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ALU99818.1TraU protein. (332 aa)    
Predicted Functional Partners:
ALU99817.1
Hypothetical protein.
 
     0.937
ALV00048.1
Conjugative relaxosome accessory transposon protein.
 
   
 0.798
virB4
Type IV secretion system protein virB4.
 
   
 0.792
ALV00044.1
Conjugal transfer mating pair stabilization protein TraN.
 
   
 0.789
ALV00055.1
Bacterial conjugation TrbI-like protein.
 
     0.786
ALV00049.1
Peptidase S26.
 
     0.782
ALV00031.1
Hypothetical protein.
 
     0.780
ALU99778.1
AAA-like domain protein.
 
     0.777
ALU99829.1
TraG-like protein, N-terminal region.
 
     0.777
ALU99991.1
AAA-like domain protein.
 
     0.777
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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