Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
cirA_3Colicin I receptor precursor. (687 aa)    
Predicted Functional Partners:
besA
Ferri-bacillibactin esterase BesA.
 
  
 0.895
degP
Periplasmic serine endoprotease DegP precursor; Belongs to the peptidase S1C family.
   
  
 0.775
tlyA
16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA.
      
 0.773
czcB
Cobalt-zinc-cadmium resistance protein CzcB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   
 0.573
nudK
GDP-mannose pyrophosphatase NudK.
       0.563
mdtE
Multidrug resistance protein MdtE precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.554
oprF
Outer membrane porin F precursor.
  
   
 0.527
tonB
Gram-negative bacterial tonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity); Belongs to the TonB family.
  
 
 0.517
ALV00574.1
Gram-negative bacterial tonB protein.
  
 
 0.517
hmuU
Hemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.502
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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