Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALV00539.1Hypothetical protein. (144 aa)    
Predicted Functional Partners:
ALV00540.1
Mu-like prophage I protein.
       0.773
ALV00541.1
Hypothetical protein.
       0.773
ALV00542.1
Hypothetical protein.
       0.773
ALV00538.1
Peptidase M15.
       0.525
ALV00536.1
Hypothetical protein.
       0.521
ALV00537.1
Hypothetical protein.
       0.521
ALV00543.1
Hypothetical protein.
       0.507
ALV00544.1
Putative ATPase subunit of terminase (gpP-like).
       0.507
ALV00545.1
Terminase-like family protein.
       0.507
ALV00546.1
Hypothetical protein.
       0.500
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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