STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM42532.1DNA polymerase. (265 aa)    
Predicted Functional Partners:
SFM29646.1
uracil-DNA glycosylase, family 4.
  
  
0.875
SFM58468.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
    
   0.759
SFM42517.1
[SSU ribosomal protein S18P]-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
  
    0.755
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
      0.703
SFM46648.1
D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase.
 
      0.697
SFM41402.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.668
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
      0.667
SFM29557.1
Pyruvate carboxylase subunit B.
  
    0.601
SFM65822.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
   
   0.585
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
       0.569
Your Current Organism:
Ectothiorhodospira mobilis
NCBI taxonomy Id: 195064
Other names: ATCC 49921, DSM 237, DSM 4180 [[Ectothiorhodospira marismortui]], E. mobilis, Ectothiorhodospira marismortui, Ectothiorhodospira mobile, NBRC 103802, strain EG-1 [[Ectothiorhodospira marismortui]], strain Trueper 8112, strain Truper 8112
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