STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE0027Hypothetical protein; 379 aa, partially similar to gpu:AE004265_8 hypothetical protein from Vibrio cholerae (383 aa); 27.3% identity in 161 aa overlap. (379 aa)    
Predicted Functional Partners:
CPE2244
Hypothetical protein; 251 aa, similar to sp:LSPA_STACA LIPOPROTEIN SIGNAL PEPTIDASE (EC 3.4.23.36) (PROLIPOPROTEIN SIGNAL PEPTIDASE) (SIGNAL PEPTIDASE II) (SPASE II) from Staphylococcus carnosus (159 aa); 23.4% identity in 145 aa overlap. Putative N-terminal signal sequence and 5 putative transmembrane regions were found by PSORT.
  
     0.629
CPE0665
Hypothetical protein; 243 aa, no significant homology.
  
     0.583
CPE0799
Hypothetical protein; 414 aa, similar to N-terminal of sp:FLIB_SALTY LYSINE-N-METHYLASE (EC 2.1.1.-) (LYSINE N-METHYLTRANSFERASE) from Salmonella typhimurium (401 aa); 28.9% identity in 204 aa overlap.
  
     0.553
CPE1000
204 aa, similar to pir:B72450 hypothetical protein APE2246 from Aeropyrum pernix (strain K1) (188 aa); 27.2% identity in 151 aa overlap.
  
     0.483
CPE1314
Muramidase; 321 aa, similar to prf:2313244A muramidase from Clostridium perfringens (321 aa); 100% identity in 321 aa overlap; cortical fragment-lytic enzyme.
  
     0.454
CPE1652
Hypothetical protein; 333 aa, partially similar to pir:H72357 hypothetical protein TM0599 from Thermotoga maritima (strain MSB8) (546 aa); 32% identity in 275 aa overlap.
  
     0.402
CPE1679
Hypothetical protein; 91 aa, similar to gpu:AP001515_138 BH2404 gene product from Bacillus halodurans (82 aa); 33.3% identity in 75 aa overlap.
  
     0.400
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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