Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CPE0141 | CPE0142 | gene:10489385 | gene:10489386 | Hypothetical protein; 53 aa, no significant homology. | Phage-related hypothetical protein; 71 aa, similar to N-terminal of prf:2416406A ORF A from Lactobacillus casei phage A2 (160 aa); 32.1% identity in 53 aa overlap. | 0.541 |
CPE0141 | CPE0143 | gene:10489385 | gene:10489387 | Hypothetical protein; 53 aa, no significant homology. | Phage-related hypothetical protein; 119 aa, similar to N-terminal of gp:AF162221_131 ORF131 from Xestia c-nigrum granulovirus (442 aa); 40% identity in 75 aa overlap. ATT start. | 0.541 |
CPE0142 | CPE0141 | gene:10489386 | gene:10489385 | Phage-related hypothetical protein; 71 aa, similar to N-terminal of prf:2416406A ORF A from Lactobacillus casei phage A2 (160 aa); 32.1% identity in 53 aa overlap. | Hypothetical protein; 53 aa, no significant homology. | 0.541 |
CPE0142 | CPE0143 | gene:10489386 | gene:10489387 | Phage-related hypothetical protein; 71 aa, similar to N-terminal of prf:2416406A ORF A from Lactobacillus casei phage A2 (160 aa); 32.1% identity in 53 aa overlap. | Phage-related hypothetical protein; 119 aa, similar to N-terminal of gp:AF162221_131 ORF131 from Xestia c-nigrum granulovirus (442 aa); 40% identity in 75 aa overlap. ATT start. | 0.773 |
CPE0143 | CPE0141 | gene:10489387 | gene:10489385 | Phage-related hypothetical protein; 119 aa, similar to N-terminal of gp:AF162221_131 ORF131 from Xestia c-nigrum granulovirus (442 aa); 40% identity in 75 aa overlap. ATT start. | Hypothetical protein; 53 aa, no significant homology. | 0.541 |
CPE0143 | CPE0142 | gene:10489387 | gene:10489386 | Phage-related hypothetical protein; 119 aa, similar to N-terminal of gp:AF162221_131 ORF131 from Xestia c-nigrum granulovirus (442 aa); 40% identity in 75 aa overlap. ATT start. | Phage-related hypothetical protein; 71 aa, similar to N-terminal of prf:2416406A ORF A from Lactobacillus casei phage A2 (160 aa); 32.1% identity in 53 aa overlap. | 0.773 |