STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE0284Probable transcriptional regulator; 340 aa, similar to gp:EFA276231_1 PSR protein from Enterococcus faecalis (390 aa); 29.3% identity in 324 aa overlap. 1 putative transmembrane region was found by PSORT. (340 aa)    
Predicted Functional Partners:
CPE0285
Conserved hypothetical protein; 283 aa, similar to prf:2516401CC yfkH gene from Bacillus cereus (289 aa); 39.4% identity in 249 aa overlap. Putative N-terminal signal sequence and 4 putative transmembrane regions were found by PSORT; Belongs to the UPF0761 family.
       0.520
CPE0283
Conserved hypothetical protein; 291 aa, similar to sp:LAXC_LACLA LACX PROTEIN, CHROMOSOMAL from Lactococcus lactis (299 aa); 33% identity in 288 aa overlap.
       0.515
CPE1701
Transcriptional pleiotropic repressor; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family.
  
   
 0.412
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.