STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE0441Hypothetical protein; 229 aa, similar to gp:MBHRDED_1 hypothetical protein from Methanosarcina barkeri (225 aa); 43.9% identity in 198 aa overlap. (229 aa)    
Predicted Functional Partners:
CPE1014
Probable flavoprotein; 878 aa, similar to gp:RCAFDXC_3 ORFU1 product, potential FMN-protein from Rhodobacter capsulatus (435 aa); 42.6% identity in 404 aa overlap.
  
 0.940
CPE1795
407 aa, similar to gp:AB017192_7 nitrate reductase NADH oxydase subunit from Clostridium perfringens (407 aa); 90.7% identity in 407 aa overlap. Putative N-terminal signal sequence was found by PSORT.
 
     0.919
naoX
NADH oxidase; 566 aa, similar to gpu:AE004394_5 NADH oxidase, putative from Vibrio cholerae (567 aa); 43% identity in 530 aa overlap. Putative N-terminal signal sequence was found by PSORT; CPE0734.
    
 0.906
hemX
492 aa, similar to >pir:T43859 uroporphyrinogen III methylas from Clostridium perfringens (492 aa); 96.3% identity in 492 aa overlap; CPE1434.
  
 0.658
CPE0547
Hypothetical protein; 516 aa, similar to C-terminal of pir:C70319 nitrite reductase (NAD(P)H) large subunit from Aquifex aeolicus (1002 aa); 24.8% identity in 452 aa overlap; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
   
 0.603
rubR1
Rubredoxin; Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
  
 
 0.576
rubR2
Rubredoxin; Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
  
 
 0.576
CPE0778
Probable flavohemoprotein; 248 aa, similar to C-terminal of gpu:AP001510_233 flavohemoglobin from Bacillus halodurans (411 aa); 37.9% identity in 240 aa overlap. 1 putative transmembrane region was found by PSORT.
  
  
 0.558
CPE1797
692 aa, similar to gp:AB017192_5 nitrate reductase catalytic subunit from Clostridium perfringen (692 aa); 96.4% identity in 692 aa overlap; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.526
CPE2584
Prismane protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.507
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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