STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE0456Hypothetical protein; 210 aa, no significant homology. (210 aa)    
Predicted Functional Partners:
CPE0455
Alkaline phosphatase-like protein; 169 aa, similar to N-terminal of sp:APL_LACLC ALKALINE PHOSPHATASE LIKE PROTEIN from Lactococcus lactis (242 aa); 30.5% identity in 154 aa overlap. Putative N-terminal signal sequence and 2 putative transmembrane regions were found by PSORT.
 
     0.655
CPE0458
Two-component sensor histidine kinase; 743 aa, similar to gpu:AP001511_43 BH1154 gene product from Bacillus halodurans (750 aa); 29.8% identity in 652 aa overlap. 6 putative transmembrane regions were found by PSORT.
       0.436
CPE0457
234 aa, similar to gpu:AP001511_42 two-component response regulator from Bacillus halodurans (232 aa); 55.7% identity in 230 aa overlap.
       0.430
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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