STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE0507Hypothetical protein; 215 aa, no significant homology. (215 aa)    
Predicted Functional Partners:
CPE1447
Hypothetical protein; 250 aa, partially similar to prf:1616280A neutral protease transcriptional activator from Bacillus stearothermophilus (406 aa); 22.2% identity in 144 aa overlap. ATA start.
 
  
 0.705
CPE0282
Hypothetical protein; 199 aa, no significant homology. 1 putative transmembrane region was found by PSORT.
  
   
 0.682
CPE1446
Hypothetical protein; 421 aa, similar to prf:2105286A transcriptional activator from Lactobacillus sp (424 aa); 22.4% identity in 398 aa overlap.
  
  
 0.670
CPE2564
223 aa, partially similar to pir:F72267 hypothetical protein TM1330 from Thermotoga maritima (strain MSB8) (111 aa); 40% identity in 55 aa overlap.
  
  
 0.648
CPE1644
108 aa, similar to sp:Y223_METJA HYPOTHETICAL PROTEIN MJ0223 from Methanococcus jannaschii (104 aa); 39.8% identity in 88 aa overlap.
  
     0.585
CPE2233
Hypothetical protein; 210 aa, no significant homology.
  
     0.583
rpoC
RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.571
rpoB
RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.542
CPE1777
Hypothetical protein; 84 aa, similar to gpu:AP001511_159 BH1270 gene product from Bacillus halodurans (93 aa); 46.1% identity in 76 aa overlap; Belongs to the UPF0473 family.
  
     0.539
CPE1352
187 aa, similar to sp:Y240_METJA HYPOTHETICAL PROTEIN MJ0240 from Methanococcus jannaschii (175 aa); 31.9% identity in 182 aa overlap.
  
     0.509
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.