STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE0580376 aa, similar to pir:B69313 iron-sulfur binding reductase homolog from Archaeoglobus fulgidus (366 aa); 28% identity in 322 aa overlap. (376 aa)    
Predicted Functional Partners:
CPE0579
Conserved hypothetical protein; 231 aa, similar to sp:YDJZ_ECOLI HYPOTHETICAL 26.2 KDA PROTEIN IN XTHA-GDHA INTERGENIC REGION from Escherichia coli (235 aa); 55.7% identity in 219 aa overlap. Putative N-terminal signal sequence and 3 putative transmembrane regions were found by PSORT.
 
   
 0.914
CPE0313
466 aa, similar to pir:D69984 glycolate oxidase subunit homolog ysfC from Bacillus subtilis (470 aa); 39.9% identity in 431 aa overlap. 2 putative transmembrane regions were found by PSORT.
 
  
 0.813
gltB
468 aa, similar to pir:H72230 glutamate synthase, beta subunit from Thermotoga maritima (strain MSB8) (468 aa); 52.2% identity in 460 aa overlap; CPE1254.
    
 0.752
CPE0581
195 aa, similar to sp:Y460_PYRHO HYPOTHETICAL PROTEIN PH0460 from Pyrococcus horikoshii (188 aa); 38.8% identity in 103 aa overlap. 5 putative transmembrane regions were found by PSORT; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.751
CPE2061
1171 aa, similar to gp:CPA17727_2 pyruvate ferredoxin oxidoreductase from Clostridium pasteurianum (1175 aa); 73.6% identity in 1167 aa overlap.
  
  
 0.750
CPE2602
Hypothetical protein; 213 aa, similar to pir:F72412 hypothetical protein from Thermotoga maritima (strain MSB8) (215 aa); 43% identity in 207 aa overlap.
  
 
 0.699
CPE1612
Hypothetical protein; 217 aa, similar to sp:YTXB_BACSU HYPOTHETICAL 23.3 KDA PROTEIN IN DNAI-THRS INTERGENIC REGION (ORF-213) from Bacillus subtilis (213 aa); 23.2% identity in 151 aa overlap. Putative N-terminal signal sequence and 6 putative transmembrane regions were found by PSORT.
   
 0.672
CPE2461
413 aa, similar to pir:D71076 probable glutamate synthase small chain from Pyrococcus horikoshii (472 aa); 39.2% identity in 403 aa overlap. 1 putative transmembrane region was found by PSORT.
    
 0.625
CPE1052
Probable thiosulfate sulfur transferase; 451 aa, similar to pir:E64935 hypothetical protein b1757 from Escherichia coli (strain K-12) (440 aa); 36.4% identity in 404 aa overlap.
 
   
 0.486
selB
635 aa, similar to gp:EAC245960_3 elongation factor SelB from Eubacterium acidaminophilum (626 aa); 43.8% identity in 635 aa overlap. 1 putative transmembrane region was found by PSORT; CPE2116.
  
   
 0.434
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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