STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE0698Hypothetical protein; 97 aa, similar to N-terminal of sp:PHEA_AQUAE P-PROTEIN [INCLUDES: CHORISMATE MUTASE (EC 5.4.99.5) (CM) from Aquifex aeolicus (362 aa); 30.1% identity in 93 aa overlap. (97 aa)    
Predicted Functional Partners:
aroC
Chorismate synthase; 321 aa, similar to pir:D75162 chorismate synthase (aroc) PAB0307 from Pyrococcus abyssi (strain Orsay) (356 aa); 41.3% identity in 334 aa overlap. 2 putative transmembrane regions were found by PSORT; CPE0697.
 
 
 0.996
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
 
  
 0.981
pabA
196 aa, similar to pir:H81135 para-aminobenzoate synthase glutamine amidotransferase component II NMB0966 from Neisseria meningitidis (196 aa); 53.4% identity in 191 aa overlap; CPE1016.
  
 
 0.934
pabB
448 aa, similar to gpu:AP001507_90 para-aminobenzoate synthase component I from Bacillus halodurans (486 aa); 37.3% identity in 405 aa overlap; CPE1017.
  
 
 0.934
pheB
Chorismate mutase; 145 aa, similar to gpu:AP001511_103 chorismate mutase from Bacillus halodurans (147 aa); 36% identity in 136 aa overlap; CPE1414; Belongs to the UPF0735 family.
  
 
 0.930
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
  
 0.899
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
 
  
 0.845
CPE0694
337 aa, similar to gp:AB018197_1 carboxysome formation protein from Synechococcus sp. MA19 (352 aa); 47.8% identity in 335 aa overlap.
 
  
 0.842
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
 
  
 0.834
rpmC
69 aa, similar to sp:RL29_BACST 50S RIBOSOMAL PROTEIN L29 from Bacillus stearothermophilus (66 aa); 64.6% identity in 65 aa overlap; CPE2397.
  
    0.821
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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