STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
splBSpore photoproduct lyase; 342 aa, similar to sp:SPL_BACSU SPORE PHOTOPRODUCT LYASE (EC 4.1.99.-) from Bacillus subtilis (199 aa); 91.5% identity in 199 aa overlap. Also similar to pir:I40865 hypothetical protein 1 from Clostridium perfringens; CPE0724. (342 aa)    
Predicted Functional Partners:
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
   
 0.777
CPE1093
Conserved hypothetical protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
     
 0.670
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
     
 0.564
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
     
 0.559
spmA
192 aa, similar to pir:S74647 spore maturation protein B from Synechocystis sp. (strain PCC 6803) (217 aa); 44.3% identity in 192 aa overlap. Putative N-terminal signal sequence and 3 putative transmembrane regions were found by PSORT; CPE2533.
      
 0.496
spmB
172 aa, similar to gpu:AP001512_162 spore maturation protein from Bacillus halodurans (178 aa); 43.6% identity in 156 aa overlap. Putative N-terminal signal sequence and 3 putative transmembrane regions were found by PSORT; CPE2532.
      
 0.494
naoX
NADH oxidase; 566 aa, similar to gpu:AE004394_5 NADH oxidase, putative from Vibrio cholerae (567 aa); 43% identity in 530 aa overlap. Putative N-terminal signal sequence was found by PSORT; CPE0734.
     
 0.486
CPE2073
Conserved hypothetical protein; Probably functions as a manganese efflux pump.
  
     0.469
CPE0635
Probable arylsulfatase activating enzyme; Involved in 'Cys-type' sulfatase maturation under anaerobic conditions. Catalyzes the post-translational modification of cysteine into 3-oxoalanine (also known as C(alpha)-formylglycine (FGly)), by a free radical chemical mechanism initiated via the reductive cleavage of S-adenosyl-L-methionine (SAM) (By similarity).
      
 0.463
CPE0723
Conserved hypothetical protein; 262 aa, similar to sp:YBIV_ECOLI HYPOTHETICAL 30.4 KDA PROTEIN IN OMPX-MOEB INTERGENIC REGION from Escherichia coli (271 aa); 37.1% identity in 259 aa overlap.
       0.444
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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