STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE0735428 aa, partially similar to pir:D82968 hypothetical protein PA5430 from Pseudomonas aeruginosa (strain PAO1) (404 aa); 25.5% identity in 314 aa overlap. Putative N-terminal signal sequence and 7 putative transmembrane regions were found by PSORT. (428 aa)    
Predicted Functional Partners:
naoX
NADH oxidase; 566 aa, similar to gpu:AE004394_5 NADH oxidase, putative from Vibrio cholerae (567 aa); 43% identity in 530 aa overlap. Putative N-terminal signal sequence was found by PSORT; CPE0734.
 
    0.799
CPE0736
Probable transporter; 443 aa, similar to gpu:AP001510_169 BH0994 gene product from Bacillus halodurans (395 aa); 24.9% identity in 369 aa overlap. Putative N-terminal signal sequence and 11 putative transmembrane regions were found by PSORT.
 
     0.707
CPE2236
190 aa, similar to pir:E81297 hypothetical protein Cj1505c from Campylobacter jejuni (strain NCTC 11168) (190 aa); 29.8% identity in 188 aa overlap; Belongs to the sulfur carrier protein TusA family.
  
  
 0.624
CPE0733
Probable transcriptional regulator; 298 aa, similar to sp:YC30_ODOSI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR YCF30 from Odontella sinensis chloroplast (309 aa); 29% identity in 262 aa overlap; LysR family.
 
     0.576
CPE0572
Hypothetical protein; 87 aa, similar to pir:F72407 hypothetical protein from Thermotoga maritima (strain MSB8) (92 aa); 43.8% identity in 80 aa overlap.
  
     0.450
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.