STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE0806427 aa, similar to sp:YA25_METJA HYPOTHETICAL PROTEIN MJ1025 from Methanococcus jannaschii (388 aa); 27.1% identity in 421 aa overlap; Belongs to the UPF0597 family. (427 aa)    
Predicted Functional Partners:
cdsA
264 aa, similar to gpu:AP001515_156 phosphatidate cytidylyltransferase (EC 2.7.7.41) from Bacillus halodurans (264 aa); 34.7% identity in 239 aa overlap. Putative N-terminal signal sequence and 6 putative transmembrane regions were found by PSORT; CPE1695; Belongs to the CDS family.
      
 0.557
CPE0805
Cyclomaltodextrinase; 610 aa, similar to pir:S63617 cymH protein from Klebsiella oxytoca (598 aa); 54.7% identity in 563 aa overlap; Belongs to the glycosyl hydrolase 13 family.
       0.424
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.