STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fhuDProbable iron(III) dicitrate ABC transporter; 314 aa, similar to pir:C69805 iron(III) dicitrate transport permease homolog yfiY from Bacillus subtilis (325 aa); 31.9% identity in 273 aa overlap; CPE0810; binding protein. (314 aa)    
Predicted Functional Partners:
fhuC-2
Probable ferrichrome ABC transporter; 260 aa, similar to sp:FHUC_BACSU FERRICHROME TRANSPORT ATP-BINDING PROTEIN FHUC from Bacillus subtilis (269 aa); 55.4% identity in 260 aa overlap; ATP-binding protein; CPE0813.
 
 
 0.942
fhuB
337 aa, similar to gpu:AP001510_258 ferrichrome ABC transporter (permease) from Bacillus halodurans (338 aa); 40.7% identity in 302 aa overlap. Putative N-terminal signal sequence and 9 putative transmembrane regions were found by PSORT; CPE0811; permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.925
fhuG
Probable ferrichrome ABC transporter; 337 aa, similar to sp:FHUG_BACSU FERRICHROME TRANSPORT SYSTEM PERMEASE PROTEIN FHUG from Bacillus subtilis (336 aa); 49.2% identity in 179 aa overlap. Putative N-terminal signal sequence and 8 putative transmembrane regions were found by PSORT; CPE0812; permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.922
CPE0795
Probable iron(III) dicitrate ABC transporter; 256 aa, similar to pir:G70022 iron(III) dicitrate transport permease homolog yusV from Bacillus subtilis (275 aa); 50.6% identity in 257 aa overlap; ATP-binding protein.
 
 
 0.844
CPE0793
Probable iron(III) dicitrate ABC transporter; 334 aa, similar to pir:D69805 iron(III) dicitrate transport permease homolog yfiZ from Bacillus subtilis (333 aa); 35% identity in 306 aa overlap. Putative N-terminal signal sequence and 6 putative transmembrane regions were found by PSORT; permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.729
CPE1043
264 aa, similar to N-terminal half of gpu:AP001512_174 iron(III) dicitrate transport system (permease) from Bacillus halodurans (491 aa); 37.8% identity in 241 aa overlap; permease.
 
 
 0.729
CPE0794
Probable iron(III) dicitrate ABC transporter; 340 aa, similar to pir:B69800 iron(III) dicitrate transport permease homolog yfhA from Bacillus subtilis (343 aa); 38% identity in 308 aa overlap. Putative N-terminal signal sequence and 8 putative transmembrane regions were found by PSORT; permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.716
CPE1215
Probable ABC transporter; 157 aa, similar to prf:2513373E Fe uptake system:SUBUNIT=permease from Streptomyces coelicolor (271 aa); 45.6% identity in 136 aa overlap; ATP-binding protein.
 
 
 0.694
CPE0224
328 aa, similar to gpu:AP001518_127 ferrichrome ABC transporter (permease) from Bacillus halodurans (328 aa); 35.6% identity in 298 aa overlap. Putative N-terminal signal sequence and 9 putative transmembrane regions were found by PSORT; permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.655
CPE1042
343 aa, similar to gpu:AP001512_173 ferric ion ABC transpoter (permease) from Bacillus halodurans (353 aa); 39.3% identity in 305 aa overlap. Putative N-terminal signal sequence and 8 putative transmembrane regions were found by PSORT; permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.642
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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