STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE0918Hypothetical protein; 134 aa, no significant homology. (134 aa)    
Predicted Functional Partners:
nrdD
586 aa, similar to prf:2518317A anaerobic ribonucleotide reductase from Alcaligenes eutrophus (676 aa); 41.4% identity in 561 aa overlap; CPE0917.
  
  
 0.644
pflA
744 aa, similar to sp:PFL_CLOPA FORMATE ACETYLTRANSFERASE (EC 2.3.1.54) (PYRUVATE FORMATE-LYASE) from Clostridium pasteurianum (740 aa); 73.7% identity in 744 aa overlap. 1 putative transmembrane region was found by PSORT; CPE1153.
  
  
 0.623
CPE2061
1171 aa, similar to gp:CPA17727_2 pyruvate ferredoxin oxidoreductase from Clostridium pasteurianum (1175 aa); 73.6% identity in 1167 aa overlap.
     
 0.593
adhE-2
865 aa, similar to pir:A49346 aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) / alcohol dehydrogenase (EC 1.1.1.1) E from Clostridium acetobutylicum (862 aa); 67.3% identity in 859 aa overlap. 1 putative transmembrane region was found by PSORT; CPE2531; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.514
CPE0919
Hypothetical protein; 240 aa, no significant homology.
       0.447
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.