STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE1030Conserved hypothetical protein; 482 aa, similar to gpu:AP001509_234 BH0796 gene product from Bacillus halodurans (500 aa); 47.3% identity in 425 aa overlap. (482 aa)    
Predicted Functional Partners:
CPE2081
Probable ABC transporter; 318 aa, similar to gpu:AP001509_233 sugar transport system (permease) (binding protein dependent transporter) from Bacillus halodurans (322 aa); 54.1% identity in 316 aa overlap. 6 putative transmembrane regions were found by PSORT; permease protein.
 
 0.978
CPE2082
Probable ABC transporter; 322 aa, similar to gpu:AP001509_232 sugar transport system (permease) (binding protein dependent transporter) from Bacillus halodurans (312 aa); 55.6% identity in 304 aa overlap. 4 putative transmembrane regions were found by PSORT; permease protein.
 
 
 0.958
CPE2087
Two-component response regulator; 507 aa, similar to gpu:AP001509_231 two-component sensor response regulator from Bacillus halodurans (508 aa); 29.2% identity in 507 aa overlap.
 
   
 0.771
CPE1415
Conserved hypothetical protein; 859 aa, similar to gpu:AP001509_227 BH0789 gene product from Bacillus halodurans (777 aa); 41.4% identity in 684 aa overlap.
 
     0.766
CPE0289
endo-beta-N-acetylglucosaminidase; 1138 aa, similar to gpu:AP001509_223 endo-beta-N-acetylglucosaminidase from Bacillus halodurans (878 aa); 45% identity in 845 aa overlap. Putative N-terminal signal sequence was found by PSORT.
 
     0.760
CPE0426
Conserved hypothetical protein; 427 aa, similar to gpu:AP001509_228 BH0790 gene product from Bacillus halodurans (454 aa); 52.8% identity in 396 aa overlap.
 
     0.736
CPE0818
endo-beta-N-acetylglucosaminidase; 1127 aa, similar to gpu:AP001509_223 endo-beta-N-acetylglucosaminidase from Bacillus halodurans (878 aa); 42.5% identity in 656 aa overlap. Putative N-terminal signal sequence was found by PSORT.
 
     0.732
CPE2088
578 aa, similar to gpu:AP001509_230 two-component sensor histidine kinase from Bacillus halodurans (587 aa); 27.2% identity in 569 aa overlap. Putative N-terminal signal sequence and 1 putative transmembrane region were found by PSORT.
 
  
 0.714
CPE2080
Alpha-mannosidase; 1044 aa, similar to gpu:AP001509_229 alpha-mannosidase from Bacillus halodurans (1039 aa); 37.2% identity in 1038 aa overlap.
 
     0.694
CPE2345
Probable maltose ABC transportor; 369 aa, similar to gp:AB035092_5 Orf5 from Clostridium perfringen (369 aa); 98.6% identity in 369 aa overlap; ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.686
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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