STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE1135Hypothetical protein; 80 aa, no significant homology. (80 aa)    
Predicted Functional Partners:
CPE1134
Hypothetical protein; 648 aa, no significant homology.
       0.727
CPE1133
624 aa, partially similar to gpu:AF278687_1 choline binding protein E from Streptococcus pneumoniae (627 aa); 26.4% identity in 447 aa overlap.
       0.689
CPE1130
933 aa, similar to pir:T00148 hypothetical protein 15 from Staphylococcus aureus phage phi PVL (694 aa); 17.5% identity in 531 aa overlap. 2 putative transmembrane regions were found by PSORT.
       0.554
CPE1131
231 aa, similar to gp:LBA131519_53 hypothetical protein from Lactobacillus bacteriophage phi adh (247 aa); 26.2% identity in 214 aa overlap.
       0.554
CPE1132
Hypothetical protein; 983 aa, partially similar to pir:F70700 hypothetical protein Rv0024 from Mycobacterium tuberculosis (strain H37RV) (281 aa); 40% identity in 120 aa overlap.
       0.554
CPE1136
Hypothetical protein; 59 aa, similar to pir:JH0445 hypothetical 10.2K protein (lyc 5' region) from Clostridium acetobutylicum (86 aa); 25% identity in 52 aa overlap.
       0.551
CPE1129
Hypothetical protein; 111 aa, no significant homology.
       0.520
CPE1137
Hypothetical protein; 67 aa, no significant homology. 2 putative transmembrane regions were found by PSORT.
       0.425
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.