STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
cilGCitrate lyase acyl carrier protein gamma subunit; Covalent carrier of the coenzyme of citrate lyase. (101 aa)    
Predicted Functional Partners:
cilB
296 aa, similar to sp:CILB_LEUMC CITRATE LYASE BETA CHAIN (EC 4.1.3.6) (CITRASE) (CITRYL-COA LYASE SUBUNIT) (EC 4.1.3.34) from Leuconostoc mesenteroides (302 aa); 57.7% identity in 286 aa overlap; CPE1148; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.996
cilA
519 aa, similar to sp:CILA_LEUMC CITRATE LYASE ALPHA CHAIN (EC 4.1.3.6) (CITRASE) (CITRATE COA-TRANSFERASE SUBUNIT) (EC 2.8.3.10) from Leuconostoc mesenteroides (512 aa); 58.7% identity in 508 aa overlap; CPE1149.
 
  
 0.996
citC
Citrate (pro-3S)-lyase ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
 
  
 0.990
CPE1150
Probable CitG protein; 170 aa, partially similar to sp:CITG_LEUMC CITG PROTEIN from Leuconostoc mesenteroides (467 aa); 33.3% identity in 162 aa overlap.
 
  
 0.981
citG
CitG protein; 286 aa, similar to gpu:AE004165_6 citG protein from Vibrio cholerae (313 aa); 34.2% identity in 260 aa overlap. 1 putative transmembrane region was found by PSORT; CPE1145.
 
  
 0.978
CPE1151
Probable malate oxidoreductase; 381 aa, similar to pir:T46727 probable malic enzyme from Weissella paramesenteroides plasmid (378 aa); 49.1% identity in 373 aa overlap. 1 putative transmembrane region was found by PSORT; malic enzyme.
 
  
 0.776
citN
446 aa, similar to gpu:AE004164_11 citrate/sodium symporter from Vibrio cholerae (448 aa); 39.8% identity in 422 aa overlap. 11 putative transmembrane regions were found by PSORT; CPE1152.
 
   
 0.765
CPE0096
516 aa, similar to gp:CPR276553_2 propionate CoA-transferase from Clostridium propionicum (524 aa); 56.6% identity in 516 aa overlap. 1 putative transmembrane region was found by PSORT; Belongs to the 3-oxoacid CoA-transferase family.
  
  
 0.576
CPE1144
Probable transcriptional regulator; 321 aa, similar to prf:2515339A regulatory protein from Leuconostoc mesenteroides (312 aa); 33.4% identity in 302 aa overlap. 1 putative transmembrane region was found by PSORT; SorC family.
 
    0.549
accB
acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
  
 0.522
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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