STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hydG299 aa, similar to pir:F75069 hydrogenase, chain gamma related protein PAB1737 from Pyrococcus abyssi (strain Orsay) (278 aa); 51.5% identity in 272 aa overlap. 1 putative transmembrane region was found by PSORT; CPE1255. (299 aa)    
Predicted Functional Partners:
gltB
468 aa, similar to pir:H72230 glutamate synthase, beta subunit from Thermotoga maritima (strain MSB8) (468 aa); 52.2% identity in 460 aa overlap; CPE1254.
 
 0.998
CPE2461
413 aa, similar to pir:D71076 probable glutamate synthase small chain from Pyrococcus horikoshii (472 aa); 39.2% identity in 403 aa overlap. 1 putative transmembrane region was found by PSORT.
 
 0.990
pyrD
Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate.
 
 
 0.927
CPE1253
Hypothetical protein; 112 aa, no significant homology. Putative N-terminal signal sequence was found by PSORT.
       0.693
CPE2061
1171 aa, similar to gp:CPA17727_2 pyruvate ferredoxin oxidoreductase from Clostridium pasteurianum (1175 aa); 73.6% identity in 1167 aa overlap.
  
  
 0.644
carB
1067 aa, similar to gpu:AP001515_270 carbamoyl-phosphate synthetase (catalytic subunit) from Bacillus halodurans (1062 aa); 56.4% identity in 1051 aa overlap. Putative N-terminal signal sequence was found by PSORT; CPE2572.
  
 
 0.637
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
  
 0.624
pyrB
307 aa, similar to sp:PYRB_PYRHO ASPARTATE CARBAMOYLTRANSFERASE (EC 2.1.3.2) (ASPARTATE TRANSCARBAMYLASE) (ATCASE) from Pyrococcus horikoshii (308 aa); 53.1% identity in 303 aa overlap; CPE1183; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
  
 0.623
carA
Carbamoyl-phosphate synthetase glutaminase subunit; 349 aa, similar to sp:CARA_BACSU CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SPECIFIC, SMALL CHAIN (EC 6.3.5.5) (CARBAMOYL-PHOSPHATE SYNTHETASE GLUTAMINE CHAIN) from Bacillus subtilis (364 aa); 52.3% identity in 346 aa overlap. 1 putative transmembrane region was found by PSORT; CPE2573.
  
  
 0.622
bioB
Biotin synthetase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
     
 0.611
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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