STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE1269348 aa, similar to pir:H64117 spermidine/putrescine-binding protein 1 precursor HI1344 from Haemophilus influenzae (strain Rd KW20) (379 aa); 27.2% identity in 298 aa overlap. (348 aa)    
Predicted Functional Partners:
CPE1271
Probable ABC transporter; 260 aa, similar to gp:BLLAMLCHA_1 putative inner membrane protein from Bacillus licheniformis (270 aa); 37.1% identity in 245 aa overlap. Putative N-terminal signal sequence and 5 putative transmembrane regions were found by PSORT; permease.
 
 
 0.997
CPE1270
Probable ABC transporter; 343 aa, similar to gpu:AB039932_2 riorf36 gene product from Agrobacterium rhizogenes (352 aa); 42.9% identity in 280 aa overlap. 1 putative transmembrane region was found by PSORT; ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.995
CPE1272
Hypothetical protein; 112 aa, partially similar to prf:2220324B attA2 gene from Agrobacterium tumefaciens (300 aa); 42.9% identity in 112 aa overlap.Also partially similar to many ABC transporter proteins (permease). 2 putative transmembrane regions were found by PSORT.
 
  
 0.955
CPE1273
Hypothetical protein; 111 aa, partially similar to gpu:AB039932_1 riorf35 gene product from Agrobacterium rhizogenes (283 aa); 34% identity in 103 aa overlap. Putative N-terminal signal sequence and 2 putative transmembrane regions were found by PSORT.
 
  
 0.936
adeC
572 aa, similar to sp:ADEC_METTH PROBABLE ADENINE DEAMINASE (EC 3.5.4.2) (ADENASE) (ADENINE AMINASE). from Methanobacterium thermoautotrophicum (strain Delta H) (538 aa); 34.7% identity in 513 aa overlap; CPE1268; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.
 
    0.931
potC
266 aa, similar to pir:G70179 spermidine/putrescine ABC transporter, permease protein (potC) homolog from Borrelia burgdorferi (263 aa); 41.2% identity in 245 aa overlap. Putative N-terminal signal sequence and 5 putative transmembrane regions were found by PSORT; CPE1970; permease protein.
 
  
 0.864
potB
281 aa, similar to pir:H70179 spermidine/putrescine ABC transporter, permease protein (potB) homolog from Borrelia burgdorferi (269 aa); 46.1% identity in 204 aa overlap. Putative N-terminal signal sequence and 6 putative transmembrane regions were found by PSORT; CPE1969; permease protein.
 
  
 0.852
potA
Probable spermidine/putrescine ABC transporter; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
  
 0.722
CPE1267
444 aa, similar to sp:YF05_METTH HYPOTHETICAL PROTEIN MTH1505 from Methanobacterium thermoautotrophicum (427 aa); 36.7% identity in 379 aa overlap.
 
     0.665
CPE0440
Probable ABC transporter; 226 aa, similar to gpu:AP001508_235 ABC transporter (ATP-binding protein) from Bacillus halodurans (349 aa); 46.7% identity in 225 aa overlap; ATP-binding protein.
  
  
 0.569
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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