Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CPE1377 | CPE1378 | gene:10490640 | gene:10490641 | Hypothetical protein; 137 aa, no significant homology. | 303 aa, similar to gpu:AE004347_10 conserved hypothetical protein from Vibrio cholerae (308 aa); 28.4% identity in 271 aa overlap. 8 putative transmembrane regions were found by PSORT. | 0.466 |
CPE1378 | CPE1377 | gene:10490641 | gene:10490640 | 303 aa, similar to gpu:AE004347_10 conserved hypothetical protein from Vibrio cholerae (308 aa); 28.4% identity in 271 aa overlap. 8 putative transmembrane regions were found by PSORT. | Hypothetical protein; 137 aa, no significant homology. | 0.466 |
CPE1378 | CPE1379 | gene:10490641 | gene:10490642 | 303 aa, similar to gpu:AE004347_10 conserved hypothetical protein from Vibrio cholerae (308 aa); 28.4% identity in 271 aa overlap. 8 putative transmembrane regions were found by PSORT. | 263 aa, similar to pir:F69903 D-alanyl-D-alanine carboxypeptidase homolog yodJ from Bacillus subtilis (273 aa); 39.8% identity in 191 aa overlap. Putative N-terminal signal sequence was found by PSORT. | 0.668 |
CPE1378 | polA | gene:10490641 | gene:10491264 | 303 aa, similar to gpu:AE004347_10 conserved hypothetical protein from Vibrio cholerae (308 aa); 28.4% identity in 271 aa overlap. 8 putative transmembrane regions were found by PSORT. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.507 |
CPE1379 | CPE1378 | gene:10490642 | gene:10490641 | 263 aa, similar to pir:F69903 D-alanyl-D-alanine carboxypeptidase homolog yodJ from Bacillus subtilis (273 aa); 39.8% identity in 191 aa overlap. Putative N-terminal signal sequence was found by PSORT. | 303 aa, similar to gpu:AE004347_10 conserved hypothetical protein from Vibrio cholerae (308 aa); 28.4% identity in 271 aa overlap. 8 putative transmembrane regions were found by PSORT. | 0.668 |
polA | CPE1378 | gene:10491264 | gene:10490641 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 303 aa, similar to gpu:AE004347_10 conserved hypothetical protein from Vibrio cholerae (308 aa); 28.4% identity in 271 aa overlap. 8 putative transmembrane regions were found by PSORT. | 0.507 |