STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE1451Hypothetical protein; 323 aa, similar to pir:G69161 conserved hypothetical protein MTH471 from Methanobacterium thermoautotrophicum (strain Delta H) (138 aa); 24.8% identity in 105 aa overlap. 3 putative transmembrane regions were found by PSORT. (323 aa)    
Predicted Functional Partners:
CPE1450
209 aa, similar to pir:B72269 ribonuclease H-related protein from Thermotoga maritima (strain MSB8) (223 aa); 37.1% identity in 205 aa overlap.
       0.834
CPE1446
Hypothetical protein; 421 aa, similar to prf:2105286A transcriptional activator from Lactobacillus sp (424 aa); 22.4% identity in 398 aa overlap.
 
     0.822
CPE1447
Hypothetical protein; 250 aa, partially similar to prf:1616280A neutral protease transcriptional activator from Bacillus stearothermophilus (406 aa); 22.2% identity in 144 aa overlap. ATA start.
 
     0.802
CPE2233
Hypothetical protein; 210 aa, no significant homology.
  
     0.755
CPE1869
Conserved hypothetical protein; 428 aa, similar to C-terminal region of gp:AF169324_12 BcbC from Pasteurella multocida (1033 aa); 27% identity in 244 aa overlap.
  
     0.732
CPE1352
187 aa, similar to sp:Y240_METJA HYPOTHETICAL PROTEIN MJ0240 from Methanococcus jannaschii (175 aa); 31.9% identity in 182 aa overlap.
  
     0.719
CPE1666
Hypothetical protein; 204 aa, partially similar to gp:AE002349_1 DNA polymerase III, epsilon subunit, putative from Chlamydia muridarum (250 aa); 31.5% identity in 111 aa overlap.
  
     0.711
CPE0665
Hypothetical protein; 243 aa, no significant homology.
  
     0.701
CPE2141
Hypothetical protein; 165 aa, no significant homology Putative N-terminal signal sequence and 3 putative transmembrane regions were found by PSORT.
  
     0.693
CPE1191
192 aa, partially similar to pir:S74741 hypothetical protein sll092 from Synechocystis sp. (strain PCC 6803) (184 aa); 39.8% identity in 103 aa overlap. Putative N-terminal signal sequence and 1 putative transmembrane region were found by PSORT.
   
    0.676
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.