STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE1611Hypothetical protein; 89 aa, no significant homology Putative N-terminal signal sequence and 2 putative transmembrane regions were found by PSORT. (89 aa)    
Predicted Functional Partners:
CPE1612
Hypothetical protein; 217 aa, similar to sp:YTXB_BACSU HYPOTHETICAL 23.3 KDA PROTEIN IN DNAI-THRS INTERGENIC REGION (ORF-213) from Bacillus subtilis (213 aa); 23.2% identity in 151 aa overlap. Putative N-terminal signal sequence and 6 putative transmembrane regions were found by PSORT.
       0.544
CPE1610
327 aa, similar to pir:F69829 endo-1,4-beta-xylanase homolog yheN from Bacillus subtilis (282 aa); 31.6% identity in 231 aa overlap. Putative N-terminal signal sequence was found by PSORT.
       0.426
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.