STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVB-2509 aa, similar to sp:SP5B_BACSU STAGE V SPORULATION PROTEIN B from Bacillus subtilis (518 aa); 23.9% identity in 493 aa overlap. Putative N-terminal signal sequence and 3 putative transmembrane regions were found by PSORT; CPE1648. (509 aa)    
Predicted Functional Partners:
CPE1647
Probable lipoprotein; 428 aa, partially similar to gp:AF226444_1 putative lipoprotein GNA2132 from Neisseria meningitidis (486 aa); 27.5% identity in 204 aa overlap. Putative N-terminal signal sequence and 1 putative transmembrane region were found by PSORT.
 
     0.750
cotS-2
334 aa, similar to pir:F69987 spore coat protein homolog ytaA from Bacillus subtilis (357 aa); 24.3% identity in 284 aa overlap; CPE2218.
  
     0.638
spoIV
Stage IV sporulation protein; 378 aa, similar to sp:YQFD_BACSU HYPOTHETICAL 45.7 KDA PROTEIN IN RPSU-PHOH INTEREGENIC REGION from Bacillus subtilis (398 aa); 23.8% identity in 366 aa overlap. Also similar to gp:BMAJ4829_4 spoIV gene product from Bacillus megaterium. 1 putative transmembrane region was found by PSORT; CPE2020.
 
   
 0.630
CPE2476
Hypothetical protein; 124 aa, similar to sp:YABQ_BACSU HYPOTHETICAL 25.1 KDA PROTEIN IN MFD-DIVIC INTERGENIC REGION from Bacillus subtilis (211 aa); 30.6% identity in 121 aa overlap. Putative N-terminal signal sequence and 2 putative transmembrane regions were found by PSORT.
 
  
 0.623
cotS
359 aa, similar to pir:F69987 spore coat protein homolog ytaA from Bacillus subtilis (357 aa); 26.7% identity in 266 aa overlap; CPE2010.
  
     0.614
CPE1645
559 aa, similar to gpu:AP001517_74 Mg-protoporphyrin IX monomethyl ester oxidative cyclas from Bacillus halodurans (592 aa); 39.4% identity in 503 aa overlap.
       0.581
CPE1646
Hypothetical protein; 200 aa, no significant homology.
       0.581
cotS-4
335 aa, similar to pir:F69987 spore coat protein homolog ytaA from Bacillus subtilis (357 aa); 21.7% identity in 281 aa overlap; CPE2222.
  
     0.577
spoVD
728 aa, similar to gpu:AP001516_1 stage V sporulation protein (soprulation specific penicillin-binding protein) (spore cortex) from Bacillus halodurans (644 aa); 38.6% identity in 360 aa overlap. Putative N-terminal signal sequence was found by PSORT; CPE0564.
  
   
 0.568
spoIIIAE
Stage III sporulation protein AE; 390 aa, similar to gpu:AP001516_222 mutants block sporulation after engulfment from Bacillus halodurans (397 aa); 26.4% identity in 333 aa overlap. Putative N-terminal signal sequence and 9 putative transmembrane regions were found by PSORT; CPE1829.
  
  
 0.548
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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