STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
feoBProbable ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (587 aa)    
Predicted Functional Partners:
feoA
72 aa, similar to gpu:AE004281_9 ferrous iron transport protein A from Vibrio cholerae (76 aa); 40.6% identity in 69 aa overlap; CPE1659.
 
  
 0.996
CPE1658
Hypothetical protein; 227 aa, no significant homology.
       0.636
CPE0276
Probable hydrogenase; 449 aa, partially similar to pir:G72256 hydrogenase (EC 1.18.99.1) (Fe) large chain from Thermotoga maritima (strain MSB8) (645 aa); 31.3% identity in 240 aa overlap.
  
   
 0.565
CPE0223
295 aa, similar to gpu:AP001518_128 ferrichrome ABC transporter (ferrichrome-binding protein) from Bacillus halodurans (302 aa); 36.2% identity in 287 aa overlap; ferrichrome-binding protein.
  
  
 0.527
CPE2000
Hypothetical protein; 85 aa, no significant homology 2 putative transmembrane regions were found by PSORT.
      
 0.502
CPE0555
889 aa, similar to sp:ATCU_BACSU POTENTIAL COPPER-TRANSPORTING ATPASE (EC 3.6.1.36) from Bacillus subtilis (803 aa); 51.6% identity in 808 aa overlap. 7 putative transmembrane regions were found by PSORT.
  
 
 0.481
CPE0721
Conserved hypothetical protein; Mediates zinc uptake. May also transport other divalent cations (By similarity); Belongs to the ZIP transporter (TC 2.A.5) family. ZupT subfamily.
     
 0.471
CPE2061
1171 aa, similar to gp:CPA17727_2 pyruvate ferredoxin oxidoreductase from Clostridium pasteurianum (1175 aa); 73.6% identity in 1167 aa overlap.
 
   
 0.466
CPE0221
Hypothetical protein; 215 aa, similar to gpu:AP001518_130 BH3299 gene product from Bacillus halodurans (221 aa); 20.3% identity in 153 aa overlap. Putative N-terminal signal sequence and 1 putative transmembrane region were found by PSORT.
      
 0.437
leuS
leucine-tRNA ligase; 816 aa, similar to sp:SYL_THEMA LEUCYL-TRNA SYNTHETASE (EC 6.1.1.4) (LEUCINE-TRNA LIGASE) (LEURS) from Thermotoga maritima (strain MSB8) (824 aa); 52.6% identity in 808 aa overlap. putative transmembrane region was found by PSORT; CPE0670; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.429
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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