STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE1772Probable O-methyltransferase; 214 aa, similar to pir:F69979 caffeoyl-CoA O-methyltransferase homolog yrrM from Bacillus subtilis (217 aa); 39.7% identity in 209 aa overlap. (214 aa)    
Predicted Functional Partners:
CPE1771
Probable protease; 409 aa, similar to pir:H69979 proteinase homolog yrrO from Bacillus subtilis (422 aa); 45.8% identity in 404 aa overlap.
 
  
 0.944
CPE1770
Probable uridine kinase; 208 aa, similar to gpu:AP001511_164 uridine kinase from Bacillus halodurans (211 aa); 53.2% identity in 188 aa overlap.
  
    0.881
CPE1773
Conserved hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
  
    0.845
typA
610 aa, similar to sp:TYPA_HELPY GTP-BINDING PROTEIN TYPA/BIPA HOMOLOG from Helicobacter pylori (strain 26695) (599 aa); 58.4% identity in 596 aa overlap; CPE1774.
  
  
 0.697
spoVD-2
Stage V sporulation protein D; 555 aa, similar to gp:AF218835_1 putative penicillin-binding protein from Clostridium perfringens (212 aa); 98.1% identity in 212 aa overlap. Putative N-terminal signal sequence was found by PSORT; CPE1769; soprulation specific penicillin-binding protein.
       0.688
sigK
Probable transcription initiation factor sigma K; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.618
CPE1882
Probable collagenase; 786 aa, similar to pir:D69102 collagenase from Methanobacterium thermoautotrophicum (strain Delta H) (807 aa); 37.5% identity in 512 aa overlap; proteinase.
  
  
 0.618
CPE1775
Conserved hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.558
CPE1776
Probable transcription regulator; 150 aa, similar to gp:AF095597_1 ferric uptake regulator homolog from Staphylococcus aureus (149 aa); 45.3% identity in 128 aa overlap; FurR family; Belongs to the Fur family.
       0.558
CPE1777
Hypothetical protein; 84 aa, similar to gpu:AP001511_159 BH1270 gene product from Bacillus halodurans (93 aa); 46.1% identity in 76 aa overlap; Belongs to the UPF0473 family.
       0.548
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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