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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE1878340 aa, similar to gpu:AP000600_10 glycolate oxidase from Arabidopsis thaliana (365 aa); 35.9% identity in 295 aa overlap. 2 putative transmembrane regions were found by PSORT. (340 aa)    
Predicted Functional Partners:
CPE1879
147 aa, similar to pir:F69744 hypothetical protein ybbK from Bacillus subtilis (151 aa); 47.9% identity in 146 aa overlap. Putative N-terminal signal sequence was found by PSORT.
       0.841
CPE0310
Probable lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.810
glpQ-2
238 aa, similar to pir:F69961 glycerophosphodiester phosphodiesterase homolog yqiK from Bacillus subtilis (239 aa); 39.2% identity in 227 aa overlap; CPE1877.
       0.774
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.628
CPE0313
466 aa, similar to pir:D69984 glycolate oxidase subunit homolog ysfC from Bacillus subtilis (470 aa); 39.9% identity in 431 aa overlap. 2 putative transmembrane regions were found by PSORT.
  
 0.595
CPE0406
448 aa, similar to pir:G70034 reticuline oxidase homolog yvdP from Bacillus subtilis (447 aa); 30.6% identity in 451 aa overlap.
  
 0.595
CPE2061
1171 aa, similar to gp:CPA17727_2 pyruvate ferredoxin oxidoreductase from Clostridium pasteurianum (1175 aa); 73.6% identity in 1167 aa overlap.
     
 0.576
rpsA
378 aa, similar to gp:AF045481_1 30S ribosomal protein S1 from Corynebacterium ammoniagenes (489 aa); 36.6% identity in 358 aa overlap; CPE2150.
  
  
 0.535
mutS2
DNA mismatch repair protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
       0.526
CPE1882
Probable collagenase; 786 aa, similar to pir:D69102 collagenase from Methanobacterium thermoautotrophicum (strain Delta H) (807 aa); 37.5% identity in 512 aa overlap; proteinase.
       0.523
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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