Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CPE1916 | hlyE | gene:10491185 | gene:10491184 | 164 aa, similar to pir:S74709 hypothetical protein sll1188 from Synechocystis sp. (strain PCC 6803) (164 aa); 43.9% identity in 164 aa overlap. | Probable hemolysin III; 213 aa, similar to sp:HLY3_BACCE HEMOLYSIN III (HLY-III) from Bacillus cereus (219 aa); 42.9% identity in 203 aa overlap. 6 putative transmembrane regions were found by PSORT; CPE1915. | 0.535 |
hlyE | CPE1916 | gene:10491184 | gene:10491185 | Probable hemolysin III; 213 aa, similar to sp:HLY3_BACCE HEMOLYSIN III (HLY-III) from Bacillus cereus (219 aa); 42.9% identity in 203 aa overlap. 6 putative transmembrane regions were found by PSORT; CPE1915. | 164 aa, similar to pir:S74709 hypothetical protein sll1188 from Synechocystis sp. (strain PCC 6803) (164 aa); 43.9% identity in 164 aa overlap. | 0.535 |
hlyE | nanA | gene:10491184 | gene:10489429 | Probable hemolysin III; 213 aa, similar to sp:HLY3_BACCE HEMOLYSIN III (HLY-III) from Bacillus cereus (219 aa); 42.9% identity in 203 aa overlap. 6 putative transmembrane regions were found by PSORT; CPE1915. | Acylneuraminate lyase; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate. | 0.519 |
hlyE | plc | gene:10491184 | gene:10489266 | Probable hemolysin III; 213 aa, similar to sp:HLY3_BACCE HEMOLYSIN III (HLY-III) from Bacillus cereus (219 aa); 42.9% identity in 203 aa overlap. 6 putative transmembrane regions were found by PSORT; CPE1915. | Phospholipase C; Bacterial hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. Constitutes an essential virulence factor in gas gangrene. Binds to eukaryotic membranes where it hydrolyzes both phosphatidylcholine and sphingomyelin. The diacylglycerol produced can activate both the arachidonic acid pathway, leading to modulation of the inflammatory response cascade and thrombosis, and protein kinase C, leading to activation of eukaryotic phospholipases and further membrane damage. Acts on human and mouse erythrocytes, but not on rabbit or horse erythrocytes. | 0.442 |
hlyE | polA | gene:10491184 | gene:10491264 | Probable hemolysin III; 213 aa, similar to sp:HLY3_BACCE HEMOLYSIN III (HLY-III) from Bacillus cereus (219 aa); 42.9% identity in 203 aa overlap. 6 putative transmembrane regions were found by PSORT; CPE1915. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.430 |
nanA | hlyE | gene:10489429 | gene:10491184 | Acylneuraminate lyase; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate. | Probable hemolysin III; 213 aa, similar to sp:HLY3_BACCE HEMOLYSIN III (HLY-III) from Bacillus cereus (219 aa); 42.9% identity in 203 aa overlap. 6 putative transmembrane regions were found by PSORT; CPE1915. | 0.519 |
nanA | polA | gene:10489429 | gene:10491264 | Acylneuraminate lyase; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.474 |
plc | hlyE | gene:10489266 | gene:10491184 | Phospholipase C; Bacterial hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. Constitutes an essential virulence factor in gas gangrene. Binds to eukaryotic membranes where it hydrolyzes both phosphatidylcholine and sphingomyelin. The diacylglycerol produced can activate both the arachidonic acid pathway, leading to modulation of the inflammatory response cascade and thrombosis, and protein kinase C, leading to activation of eukaryotic phospholipases and further membrane damage. Acts on human and mouse erythrocytes, but not on rabbit or horse erythrocytes. | Probable hemolysin III; 213 aa, similar to sp:HLY3_BACCE HEMOLYSIN III (HLY-III) from Bacillus cereus (219 aa); 42.9% identity in 203 aa overlap. 6 putative transmembrane regions were found by PSORT; CPE1915. | 0.442 |
polA | hlyE | gene:10491264 | gene:10491184 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | Probable hemolysin III; 213 aa, similar to sp:HLY3_BACCE HEMOLYSIN III (HLY-III) from Bacillus cereus (219 aa); 42.9% identity in 203 aa overlap. 6 putative transmembrane regions were found by PSORT; CPE1915. | 0.430 |
polA | nanA | gene:10491264 | gene:10489429 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | Acylneuraminate lyase; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate. | 0.474 |