STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacF-2423 aa, similar to gpu:AP001512_122 D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) from Bacillus halodurans (387 aa); 33.1% identity in 257 aa overlap. Putative N-terminal signal sequence and 1 putative transmembrane region were found by PSORT; CPE1976; penicilin binding protein 5; Belongs to the peptidase S11 family. (423 aa)    
Predicted Functional Partners:
recO
Probable DNA repair protein; Involved in DNA repair and RecF pathway recombination.
  
    0.701
spmA
192 aa, similar to pir:S74647 spore maturation protein B from Synechocystis sp. (strain PCC 6803) (217 aa); 44.3% identity in 192 aa overlap. Putative N-terminal signal sequence and 3 putative transmembrane regions were found by PSORT; CPE2533.
  
  
 0.695
spmB
172 aa, similar to gpu:AP001512_162 spore maturation protein from Bacillus halodurans (178 aa); 43.6% identity in 156 aa overlap. Putative N-terminal signal sequence and 3 putative transmembrane regions were found by PSORT; CPE2532.
  
  
 0.634
spoIIP
361 aa, similar to gpu:AP001513_176 stage II sporulation protein P from Bacillus halodurans (377 aa); 31.9% identity in 204 aa overlap. Putative N-terminal signal sequence was found by PSORT; CPE2040.
  
  
 0.627
ddlB
D-alanine-D-alanine ligase; Cell wall formation.
 
  
 0.535
spoVE
374 aa, similar to sp:SP5E_BACSU STAGE V SPORULATION PROTEIN E. from Bacillus subtilis (366 aa); 43.2% identity in 352 aa overlap. Putative N-terminal signal sequence and 8 putative transmembrane regions were found by PSORT; CPE1859; Belongs to the SEDS family.
 
  
 0.520
CPE1975
Hypothetical protein; 188 aa, no significant homology 1 putative transmembrane region was found by PSORT.
       0.509
ddlA
D-alanine-D-alanine ligase; Cell wall formation.
 
  
 0.497
spoVD-3
739 aa, similar to gpu:AP001516_1 stage V sporulation protein (soprulation specific penicillin-binding protein) (spore cortex) from Bacillus halodurans (644 aa); 33.3% identity in 651 aa overlap. 1 putative transmembrane region was found by PSORT; CPE1863; soprulation specific penicillin-binding protein.
 
  
 0.490
spoVD-4
727 aa, similar to gpu:AP001516_1 stage V sporulation protein (soprulation specific penicillin-binding protein) (spore cortex) from Bacillus halodurans (644 aa); 37.5% identity in 627 aa overlap. Putative N-terminal signal sequence was found by PSORT; CPE1880; soprulation specific penicillin-binding protein.
 
  
 0.474
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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