STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE1999336 aa, partially similar to pir:T12792 hypothetical protein yomE from pir:T12792 hypothetical protein yomE - Bacillus subtilis phage SPBc2 (644 aa); 30.4% identity in 168 aa overlap. Putative N-terminal signal sequence was found by PSORT. (336 aa)    
Predicted Functional Partners:
CPE1998
Hypothetical protein; 349 aa, no significant homology Putative N-terminal signal sequence was found by PSORT.
 
  
 0.964
CPE2071
Conserved hypothetical protein; 466 aa, similar to prf:2302324B rfbB gene from Salmonella enterica (459 aa); 32% identity in 406 aa overlap. Putative N-terminal signal sequence and 4 putative transmembrane regions were found by PSORT.
  
     0.446
spoVB-2
509 aa, similar to sp:SP5B_BACSU STAGE V SPORULATION PROTEIN B from Bacillus subtilis (518 aa); 23.9% identity in 493 aa overlap. Putative N-terminal signal sequence and 3 putative transmembrane regions were found by PSORT; CPE1648.
 
     0.426
CPE0717
Hypothetical protein; 470 aa, some similarity to gpu:AP001520_227 BH4003 gene product from Bacillus halodurans (264 aa); 30.6% identity in 173 aa overlap. 1 putative transmembrane region was found by PSORT.
  
     0.425
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.