STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE2006Hypothetical protein; 295 aa, partially similar to sp:YORS_CLOAB HYPOTHETICAL 14.0 KDA PROTEIN IN SIGA 3'REGION (ORF S) from Clostridium acetobutylicum (118 aa); 25.9% identity in 116 aa overlap. Putative N-terminal signal sequence and 4 putative transmembrane regions were found by PSORT. (295 aa)    
Predicted Functional Partners:
CPE2004
262 aa, similar to gp:SCC30_9 hypothetical protein SCC30.09c from Streptomyces coelicolor A3(2) (285 aa); 34.1% identity in 258 aa overlap.
       0.841
CPE2005
Conserved hypothetical protein; 229 aa, similar to gp:D78182_2 ORF3 gene product from Streptococcus mutans (232 aa); 33.6% identity in 229 aa overlap.
       0.841
sigA
Transcription initiation factor sigma A; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
       0.634
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.634
dgtP
342 aa, similar to sp:DGTP_RICPR DEOXYGUANOSINETRIPHOSPHATE TRIPHOSPHOHYDROLASE (EC 3.1.5.1) (DGTPASE) (DGTP TRIPHOSPHOHYDROLASE) from Rickettsia prowazekii (383 aa); 38.6% identity in 316 aa overlap; CPE2009; Belongs to the dGTPase family. Type 2 subfamily.
       0.542
cotS
359 aa, similar to pir:F69987 spore coat protein homolog ytaA from Bacillus subtilis (357 aa); 26.7% identity in 266 aa overlap; CPE2010.
       0.500
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.