STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recJ592 aa, similar to pir:H69980 single-strand DNA-specific exonuclease homolog yrvE from Bacillus subtilis (786 aa); 34.5% identity in 585 aa overlap. 1 putative transmembrane region was found by PSORT; CPE2065. (592 aa)    
Predicted Functional Partners:
CPE2066
Probable zinc protease; 403 aa, similar to sp:Y219_RICPR HYPOTHETICAL ZINC PROTEASE RP219 (EC 3.4.99.-) from Rickettsia prowazekii (412 aa); 24.5% identity in 388 aa overlap.
  
    0.848
parE
650 aa, similar to sp:GYRB_BACHD DNA GYRASE SUBUNIT B (EC 5.99.1.3) from Bacillus halodurans (637 aa); 48.9% identity in 648 aa overlap; CPE2069.
  
  
 0.685
parC
979 aa, similar to sp:PARC_STAAU TOPOISOMERASE IV SUBUNIT A (EC 5.99.1.-) from Staphylococcus aureus (800 aa); 46.6% identity in 693 aa overlap; CPE2068.
     
 0.665
CPE1745
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
 
     0.648
recO
Probable DNA repair protein; Involved in DNA repair and RecF pathway recombination.
 
   
 0.644
CPE2067
193 aa, similar to pir:C81363 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein Cj0899c from Campylobacter jejuni (strain NCTC 11168) (187 aa); 31.7% identity in 183 aa overlap. 1 putative transmembrane region was found by PSORT.
       0.637
mutL
DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
  
   
 0.612
smf
360 aa, similar to gpu:AE004096_2 smf protein from Vibrio cholerae (371 aa); 39.3% identity in 275 aa overlap; CPE1703.
 
   
 0.607
CPE1293
329 aa, similar to pir:F69210 conserved hypothetical protein MTH83 from Methanobacterium thermoautotrophicum (strain Delta H) (379 aa); 30.9% identity in 223 aa overlap. Putative N-terminal signal sequence was found by PSORT.
  
  
 0.567
CPE0399
225 aa, similar to pir:E83401 probable transporter PA1958 from Pseudomonas aeruginosa (191 aa); 23.6% identity in 178 aa overlap. 6 putative transmembrane regions were found by PSORT.
   
  
 0.550
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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