STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE2073Conserved hypothetical protein; Probably functions as a manganese efflux pump. (202 aa)    
Predicted Functional Partners:
CPE1814
Stage IV sporulation protein B; 386 aa, similar to gp:BSU68235_2 SpoIVB from Bacillus subtilis (426 aa); 47.3% identity in 313 aa overlap. Putative N-terminal signal sequence was found by PSORT.
  
     0.617
spoVAF
473 aa, similar to gpu:AP001512_10 stage V sporulation protein AF from Bacillus halodurans (487 aa); 38% identity in 466 aa overlap. 4 putative transmembrane regions were found by PSORT; CPE0984.
  
     0.593
CPE2477
Conserved hypothetical protein; 99 aa, similar to gpu:AP001507_74 BH0074 gene product from Bacillus halodurans (103 aa); 43.8% identity in 64 aa overlap.
  
   
 0.582
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.575
sigE
Probable transcription initiation factor sigma E; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.560
CPE2072
Probable UV endonuclease; Component in a DNA repair pathway. Removal of UV LIGHT damaged nucleotides. Recognizes pyrimidine dimers and cleave a phosphodiester bond immediately 5' to the lesion (By similarity).
       0.557
sigG
Probable transcription initiation factor sigma G; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.525
spoIIIAD
128 aa, similar to sp:S3AD_BACSU STAGE III SPORULATION PROTEIN AD from Bacillus subtilis (133 aa); 34% identity in 103 aa overlap. S.D. unclear. Putative N-terminal signal sequence and 3 putative transmembrane regions were found by PSORT; CPE1830.
  
     0.521
spoVAD
339 aa, similar to sp:SP54_BACSU STAGE V SPORULATION PROTEIN AD from Bacillus subtilis (338 aa); 39.2% identity in 332 aa overlap; CPE2046.
  
    0.520
CPE1993
Conserved hypothetical protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.510
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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