STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE2158Probable adhesin; 298 aa, similar to pir:A69756 adhesion protein homolog ycdH from Bacillus subtilis (319 aa); 33% identity in 315 aa overlap. Putative N-terminal signal sequence was found by PSORT; Belongs to the bacterial solute-binding protein 9 family. (298 aa)    
Predicted Functional Partners:
CPE1457
269 aa, similar to pir:F71375 probable ABC transporter, permease protein from [Treponema pallidum (266 aa); 41.7% identity in 242 aa overlap. 7 putative transmembrane regions were found by PSORT; permease protein.
 
 0.994
CPE1456
222 aa, similar to pir:E71375 probable ABC transporter, ATP-binding protein from Treponema pallidum (238 aa); 37.3% identity in 212 aa overlap; ATP-binding protein.
 
 
 0.990
CPE0039
Conserved hypothetical protein; 297 aa, similar to gpu:AP001512_105 BH1518 gene product from Bacillus halodurans (337 aa); 39.6% identity in 283 aa overlap. Putative N-terminal signal sequence and 5 putative transmembrane regions were found by PSORT.
 
  
 0.733
CPE1216
Hypothetical protein; 49 aa, no significant homology.
  
  
 0.723
CPE2160
380 aa, similar to pir:A69819 probable phosphoesterase (EC 3.1.-.-) yhaO from Bacillus subtilis (408 aa); 28% identity in 296 aa overlap. 1 putative transmembrane region was found by PSORT.
 
     0.692
CPE0038
194 aa, similar to pir:B69760 conserved hypothetical protein yciC from Bacillus subtilis (397 aa); 28.2% identity in 174 aa overlap. 1 putative transmembrane region was found by PSORT.
  
  
 0.656
purL
1266 aa, similar to pir:G81961 phosphoribosylformylglycinamidine synthase (EC 6.3.5.3) NMA0445 from Neisseria meningitidis (group A strain Z2491) (1320 aa); 25.6% identity in 1056 aa overlap. 1 putative transmembrane region was found by PSORT; CPE0680.
     
 0.630
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.603
rpmB
84 aa, similar to sp:R28A_STRCO 50S RIBOSOMAL PROTEIN L28- from Streptomyces coelicolor A3(2) (63 aa); 58.6% identity in 58 aa overlap; CPE1734; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.597
cobW
308 aa, similar to pir:H70313 cobalamin synthesis related protein CobW from Aquifex aeolicus (292 aa); 30.7% identity in 261 aa overlap; CPE0037.
  
  
 0.591
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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