STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmE50S ribosomal protein L31; Binds the 23S rRNA. (68 aa)    
Predicted Functional Partners:
rpsI
30S ribosomal protein S9; 130 aa, similar to gpu:AP001507_169 ribosomal protein S9 (BS10) from Bacillus halodurans (130 aa); 70% identity in 130 aa overlap; CPE2369; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.997
rpsP
81 aa, similar to pir:C47154 ribosomal protein S16 (BS17) rpsP from Bacillus subtilis (90 aa); 72.5% identity in 80 aa overlap; BS17; CPE1712; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.996
CPE2130
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
 
 0.996
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.995
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.995
rpmF
50S ribosomal protein L32; 60 aa, similar to gpu:AP001516_12 ribosomal protein L32 from Bacillus halodurans (57 aa); 50.9% identity in 57 aa overlap; CPE1722; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.995
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.995
rpmG
49 aa, similar to sp:RL33_THETH 50S RIBOSOMAL PROTEIN L33 from Thermus thermophilus (54 aa); 61.2% identity in 49 aa overlap; CPE2420.
  
 
 0.995
rpmB
84 aa, similar to sp:R28A_STRCO 50S RIBOSOMAL PROTEIN L28- from Streptomyces coelicolor A3(2) (63 aa); 58.6% identity in 58 aa overlap; CPE1734; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.994
CPE2128
100 aa, similar to sp:RL27_BACSU 50S RIBOSOMAL PROTEIN L27 (BL30) (BL24) from Bacillus subtilis (134 aa); 78.3% identity in 92 aa overlap; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.994
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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