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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hydAHydrogenase; 572 aa, similar to gp:AB016820_1 hydrogenase (EC 1.18.99.1) from Clostridium perfringens (572 aa); 100% identity in 572 aa overlap; CPE2346. (572 aa)    
Predicted Functional Partners:
CPE1797
692 aa, similar to gp:AB017192_5 nitrate reductase catalytic subunit from Clostridium perfringen (692 aa); 96.4% identity in 692 aa overlap; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.897
bioB-2
Probable biotin synthetase; 347 aa, similar to prf:2513478BMUThermotoga maritima biotin synthetase (EC 2.8.1.6) from Thermotoga maritima (348 aa); 54.8% identity in 325 aa overlap; CPE2460.
 
  
 0.876
CPE2061
1171 aa, similar to gp:CPA17727_2 pyruvate ferredoxin oxidoreductase from Clostridium pasteurianum (1175 aa); 73.6% identity in 1167 aa overlap.
     
 0.844
CPE0108
Probaqble GTP-binding protein; 454 aa, similar to gp:CTH275974_4 putative GTP-binding protein from Clostridium thermocellum (400 aa); 39% identity in 433 aa overlap.
 
   
 0.778
CPE0110
473 aa, similar to pir:B72274 hypothetical protein TM1267 from Thermotoga maritima (strain MSB8) (473 aa); 49.4% identity in 468 aa overlap. 1 putative transmembrane region was found by PSORT.
 
   
 0.761
CPE0111
Hypothetical protein; 83 aa, similar to pir:A72274 hypothetical protein from Thermotoga maritima (strain MSB8) (82 aa); 34.7% identity in 75 aa overlap.
 
     0.660
buk
Butyrate kinase; Catalyzes the conversion of butyryl-CoA through butyryl phosphate to butyrate; Belongs to the acetokinase family.
     
 0.652
CPE1065
Ferredoxin-like protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
     
 0.639
CPE2461
413 aa, similar to pir:D71076 probable glutamate synthase small chain from Pyrococcus horikoshii (472 aa); 39.2% identity in 403 aa overlap. 1 putative transmembrane region was found by PSORT.
    
 0.578
hydG
299 aa, similar to pir:F75069 hydrogenase, chain gamma related protein PAB1737 from Pyrococcus abyssi (strain Orsay) (278 aa); 51.5% identity in 272 aa overlap. 1 putative transmembrane region was found by PSORT; CPE1255.
      
 0.528
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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