STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE2374Probable ABC transporter; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. (281 aa)    
Predicted Functional Partners:
CPE2372
Conserved hypothetical protein; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 0.998
CPE2373
Probable ABC transporter; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
0.973
CPE1582
273 aa, partially similar to pir:F75200 hypothetical protein PAB2261 from Pyrococcus abyssi (strain Orsay) (248 aa); 31.5% identity in 127 aa overlap. 5 putative transmembrane regions were found by PSORT.
 
 0.959
bioY
Biotin synthase; 184 aa, similar to sp:BIOY_BACSH BIOY PROTEIN from Bacillus sphaericus (215 aa); 43.4% identity in 173 aa overlap. Putative N-terminal signal sequence and 4 putative transmembrane regions were found by PSORT; CPE1545.
 
 
 0.943
CPE0707
Probable ABC transporter; 296 aa, similar to gp:AF084104_17 NatA from Bacillus firmus (299 aa); 43.3% identity in 293 aa overlap; ATP-binding protein.
 
    
0.874
cbiQ
235 aa, similar to pir:H64435 cobalt transport protein Q homolog from Methanococcus jannaschii (268 aa); 34.2% identity in 225 aa overlap. Putative N-terminal signal sequence and 3 putative transmembrane regions were found by PSORT; CPE0194.
 
 
 0.815
truA-2
tRNA-pseudouridine synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.768
cbiM
Probable cobalt transport protein; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.
  
 
 0.733
rpsE
30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
 
    0.726
CPE1421
Hypothetical protein; 250 aa, partially similar to gp:BAMALAMYA_3 membrane protein from Bacillus acidopullulyticus (183 aa); 26.4% identity in 239 aa overlap. Putative N-terminal signal sequence and 5 putative transmembrane regions were found by PSORT.
 
 
 
 0.670
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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