STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE2494302 aa, similar to gpu:AP001515_47 transcriptional regulator from Bacillus halodurans (337 aa); 33.9% identity in 304 aa overlap; LacI family. (302 aa)    
Predicted Functional Partners:
CPE2627
241 aa, similar to gpu:AP001508_142 transcriptional regulator (GntR family) from Bacillus halodurans (240 aa); 36% identity in 239 aa overlap; GntR family.
  
   
 0.598
hpr
Phosphocarrier protein; 86 aa, similar to sp:PTHP_STAAU PHOSPHOCARRIER PROTEIN HPR (HISTIDINE-CONTAINING PROTEIN) from Staphylococcus aureus (88 aa); 56.5% identity in 69 aa overlap; CPE1669.
   
 
 0.596
CPE2435
Probable transcriptional regulator; 240 aa, similar to pir:D70044 transcription regulator GntR family homolog yvoA from Bacillus subtilis (243 aa); 37.3% identity in 225 aa overlap; GntR family.
  
   
 0.557
punA
Purine-nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
     
 0.557
CPE2358
668 aa, similar to sp:YQIR_BACSU PUTATIVE SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR IN MMGE-BFMBAA INTERGENIC REGION from Bacillus subtilis (692 aa); 38.9% identity in 524 aa overlap. 1 putative transmembrane region was found by PSORT.
   
 
 0.514
CPE1283
249 aa, similar to gpu:AP001515_128 transcriptional regulator (GntR family) from Bacillus halodurans (242 aa); 24.9% identity in 229 aa overlap; GntR family.
  
   
 0.444
CPE0584
PTS system; 630 aa, similar to pir:H69626 PTS fructose-specific enzyme IIBC component fruA from Bacillus subtilis (635 aa); 57.1% identity in 627 aa overlap. 7 putative transmembrane regions were found by PSORT; fructose-specific enzyme IIBC component.
     
 0.424
murC
UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
       0.416
Your Current Organism:
Clostridium perfringens 13
NCBI taxonomy Id: 195102
Other names: C. perfringens str. 13, Clostridium perfringens str. 13
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