| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CPF_1655 | CPF_1920 | CPF_1655 | CPF_1920 | Identified by match to protein family HMM PF00929. | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | 0.931 |
| CPF_1655 | CPF_2759 | CPF_1655 | CPF_2759 | Identified by match to protein family HMM PF00929. | Putative DNA polymerase III, delta prime subunit; Identified by similarity to SP:P37540. | 0.955 |
| CPF_1655 | dinB | CPF_1655 | CPF_1818 | Identified by match to protein family HMM PF00929. | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.520 |
| CPF_1655 | dnaN | CPF_1655 | CPF_0002 | Identified by match to protein family HMM PF00929. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.967 |
| CPF_1655 | dnaX | CPF_1655 | CPF_0052 | Identified by match to protein family HMM PF00929. | DNA polymerase III, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.955 |
| CPF_1655 | holA | CPF_1655 | CPF_2300 | Identified by match to protein family HMM PF00929. | DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128. | 0.958 |
| CPF_1655 | mutL | CPF_1655 | CPF_1359 | Identified by match to protein family HMM PF00929. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.466 |
| CPF_1655 | polA | CPF_1655 | CPF_2250 | Identified by match to protein family HMM PF00929. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.691 |
| CPF_1655 | polC | CPF_1655 | CPF_1945 | Identified by match to protein family HMM PF00929. | DNA polymerase III, alpha subunit, Gram-positive type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.938 |
| CPF_1920 | CPF_1655 | CPF_1920 | CPF_1655 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | Identified by match to protein family HMM PF00929. | 0.931 |
| CPF_1920 | CPF_2759 | CPF_1920 | CPF_2759 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | Putative DNA polymerase III, delta prime subunit; Identified by similarity to SP:P37540. | 0.938 |
| CPF_1920 | dnaN | CPF_1920 | CPF_0002 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.952 |
| CPF_1920 | dnaX | CPF_1920 | CPF_0052 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | DNA polymerase III, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.938 |
| CPF_1920 | holA | CPF_1920 | CPF_2300 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128. | 0.948 |
| CPF_1920 | polA | CPF_1920 | CPF_2250 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.487 |
| CPF_1920 | polC | CPF_1920 | CPF_1945 | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | DNA polymerase III, alpha subunit, Gram-positive type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.909 |
| CPF_2759 | CPF_1655 | CPF_2759 | CPF_1655 | Putative DNA polymerase III, delta prime subunit; Identified by similarity to SP:P37540. | Identified by match to protein family HMM PF00929. | 0.955 |
| CPF_2759 | CPF_1920 | CPF_2759 | CPF_1920 | Putative DNA polymerase III, delta prime subunit; Identified by similarity to SP:P37540. | Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929. | 0.938 |
| CPF_2759 | dnaN | CPF_2759 | CPF_0002 | Putative DNA polymerase III, delta prime subunit; Identified by similarity to SP:P37540. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.985 |
| CPF_2759 | dnaX | CPF_2759 | CPF_0052 | Putative DNA polymerase III, delta prime subunit; Identified by similarity to SP:P37540. | DNA polymerase III, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.930 |
