STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0010Conserved hypothetical protein; Identified by similarity to GB:AAO34741.1. (167 aa)    
Predicted Functional Partners:
CPF_2030
Conserved hypothetical protein; Identified by similarity to PIR:D97107; match to protein family HMM PF06949; Belongs to the UPF0473 family.
  
     0.668
CPF_2502
Putative lipoprotein.
  
     0.621
CPF_1649
Identified by match to protein family HMM PF01261.
  
     0.577
CPF_0011
Putative membrane protein; Identified by match to protein family HMM PF03699.
       0.562
CPF_0012
FAD-dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF04324.
       0.461
CPF_0013
Conserved hypothetical protein; Identified by similarity to PIR:E96901.
       0.458
CPF_2866
[2Fe-2S]-binding domain protein; Identified by match to protein family HMM PF04324.
  
    0.456
CPF_2234
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
 
   0.418
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.410
CPF_0339
Cell cycle protein, FtsW/RodA/SpoVE family; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.
  
     0.400
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.