STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0010Conserved hypothetical protein; Identified by similarity to GB:AAO34741.1. (167 aa)    
Predicted Functional Partners:
CPF_2030
Conserved hypothetical protein; Identified by similarity to PIR:D97107; match to protein family HMM PF06949; Belongs to the UPF0473 family.
  
     0.668
CPF_2502
Putative lipoprotein.
  
     0.621
CPF_1649
Identified by match to protein family HMM PF01261.
  
     0.577
CPF_0011
Putative membrane protein; Identified by match to protein family HMM PF03699.
       0.557
CPF_0012
FAD-dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF04324.
       0.457
CPF_0013
Conserved hypothetical protein; Identified by similarity to PIR:E96901.
       0.453
CPF_2866
[2Fe-2S]-binding domain protein; Identified by match to protein family HMM PF04324.
 
    0.452
CPF_2234
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
 
   0.434
CPF_0650
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
   0.411
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.406
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.