Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pepTPeptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family. (406 aa)    
Predicted Functional Partners:
CPF_0028
Identified by match to protein family HMM PF03734.
       0.525
CPF_0866
Metallopeptidase, M24 family; Identified by match to protein family HMM PF00557; match to protein family HMM PF01321.
 
 
 0.427
CPF_2261
Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.
  
    0.403
CPF_2820
Metallopeptidase, family M24; Identified by match to protein family HMM PF00557; match to protein family HMM PF01321.
  
 
 0.401
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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